PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923739.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 297aa    MW: 34432.8 Da    PI: 8.9274
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923739.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50221492128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                      pGfrFhPtdeelv +yL++kve+k+l++ e+ik++diyk++PwdLp ++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ 
  XP_010923739.1  22 LPGFRFHPTDEELVGFYLRRKVEKKPLRT-EIIKQIDIYKYDPWDLPISTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIHSTg 115
                     59*************************99.89***************76667899**************************************86 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_010923739.1 116 dAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149
                     66667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5421176IPR003441NAC domain
PROSITE profilePS5100553.78721176IPR003441NAC domain
PfamPF023652.1E-2523149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDNRSKGEQK VVLEGEEEDV ALPGFRFHPT DEELVGFYLR RKVEKKPLRT EIIKQIDIYK  60
YDPWDLPIST VGGEKEWYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDRP IHSTGDAGDC  120
IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP ATDKNNDNSP RLQEAEIWTI CRIFKRNVSY  180
KKYQQGWKAS ASKQMSTESS SKTSSFESDT GDEYKHLGSS GILRGEMKLI TNYYEEENQM  240
LPSQWNPMVQ APLTTWRPNI PNPSTNDQFF KDGNWDELGR IMEFMTDTNK AHLGRYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-492318219171NO APICAL MERISTEM PROTEIN
1ut4_B1e-492318219171NO APICAL MERISTEM PROTEIN
1ut7_A1e-492318219171NO APICAL MERISTEM PROTEIN
1ut7_B1e-492318219171NO APICAL MERISTEM PROTEIN
3swm_A1e-492318222174NAC domain-containing protein 19
3swm_B1e-492318222174NAC domain-containing protein 19
3swm_C1e-492318222174NAC domain-containing protein 19
3swm_D1e-492318222174NAC domain-containing protein 19
3swp_A1e-492318222174NAC domain-containing protein 19
3swp_B1e-492318222174NAC domain-containing protein 19
3swp_C1e-492318222174NAC domain-containing protein 19
3swp_D1e-492318222174NAC domain-containing protein 19
4dul_A1e-492318219171NAC domain-containing protein 19
4dul_B1e-492318219171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923739.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-88NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM0SUZ61e-129M0SUZ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P02170_0011e-129(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-86NAC domain containing protein 42